This example shows how you can fit a confirmatory factor analysis model by the FACTOR modeling language. Thirtytwo students
take tests of their verbal and math abilities. Six tests are administered separately. Tests x1
–x3
test their verbal skills and tests y1
–y3
test their math skills.
The data are shown in the following DATA step:
data scores; input x1 x2 x3 y1 y2 y3; datalines; 23 17 16 15 14 16 29 26 23 22 18 19 14 21 17 15 16 18 20 18 17 18 21 19 25 26 22 26 21 26 26 19 15 16 17 17 14 17 19 4 6 7 12 17 18 14 16 13 25 19 22 22 20 20 7 12 15 10 11 8 29 24 30 14 13 16 28 24 29 19 19 21 12 9 10 18 19 18 11 8 12 15 16 16 20 14 15 24 23 16 26 25 21 24 23 24 20 16 19 22 21 20 14 19 15 17 19 23 14 20 13 24 26 25 29 24 24 21 20 18 26 28 26 28 26 23 20 23 24 22 23 22 23 24 20 23 22 18 14 18 17 13 16 14 28 34 27 25 21 21 17 12 10 14 12 16 8 1 13 14 15 14 22 19 19 13 11 14 18 21 18 15 18 19 12 12 10 13 13 16 22 14 20 20 18 19 29 21 22 13 17 12 ;
Because of the unambiguous nature of the tests, you hypothesize that this is a confirmatory factor model with two factors:
one is the verbal
ability factor and the other is the math
ability factor. You can represent such a confirmatory factor model by the following path diagram:
Output 29.12.1:
In the path diagram, there are two clusters of variables. One cluster is for the verbal
factor and the other is for the math
factor. The singleheaded arrows in the path diagram represent functional relationships between factors and the observed
variables. The doubleheaded arrows that point to single variables represent variances of the factors or error variances of
the observed variables. The doubleheaded arrow that connect the two factors represents their covariance. All but two of these
arrows are not labeled with numbers. Each of the unlabeled arrows represents a free parameter in the confirmatory factor model.
You label the doubleheaded arrows that attach to the two factors with the constant 1. This means that the variances of the
factors are fixed at 1.0 in the model.
You can specify the confirmatory factor model by the FACTOR model language of PROC CALIS, as shown in the following statements:
proc calis data=scores; factor verbal ===> x1x3, math ===> y1y3; pvar verbal = 1., math = 1.; run;
In each of the entry of the FACTOR statement, you specify a latent factor, followed by a list of observed variables that are
functionally related to the latent factor. For example, in the first entry, the verbal
factor is related to variables x1
–x3
, as shown by the singleheaded arrows in the path diagram. In fact, all singleheaded arrows in the path diagram are specified
in the FACTOR statement. Notice that each entry of the FACTOR statement must take the format of
factor_name ===> variable_list
You cannot reverse the arrow specification as in the following:
variable_list <=== factor_name
Nor you can have a specification such as the following:
variable_list ===> factor_name
However, you can specify the functional relationships between factors and variables in different entries. For example, you can specify the same confirmatory factor model by the following statements:
title "Basic Confirmatory Factor Model: Separate Path Entries"; title2 "FACTOR Model Specification"; proc calis data=scores; factor verbal ===> x1, verbal ===> x2, verbal ===> x3, math ===> y1, math ===> y2, math ===> y3; pvar verbal = 1., math = 1.; fitindex noindextype on(only)=[chisq df probchi rmsea srmr bentlercfi]; run;
In the PVAR statement, which is for the specification of variances or error variances, you fix the variances of the latent
factors to 1. This completes the model specification of the confirmatory factor model, although you do not specify other arrows
in the path diagram as free parameters in these statements. The reason is that in the FACTOR modeling language, the variances
and covariances among factors and the error variances of the observed variables are default parameters in the confirmatory
factor model. It is not necessary to specify these parameters (or the corresponding arrows in the path diagram) explicitly
if they are free parameters in the model. You can also specify these free parameters explicitly without affecting the estimation.
However, if these parameters (or the corresponding doubleheaded arrows in the path diagram) are intended to be constrained
parameters or fixed values, you must specify them explicitly. For example, in the current confirmatory factor model, you must
provide explicit specifications for the variances of the verbal
and the math
factors because these parameters are fixed at 1.
Output 29.12.2 shows the modeling information and the variables in the confirmatory factor model.
Output 29.12.2: Modeling Information and Variables of the CFA Model: Scores Data
In the beginning of the output, PROC CALIS shows the data set, the number of observations, the model type, and the analysis type. The default analysis type in PROC CALIS is covariances (that is, covariance structures). If you want to analyze the correlation structures instead, you can use the CORR option in the PROC CALIS statement. Next, PROC CALIS shows the list of variables and factors in the model. As expected, the number of variables is 6 and the number of factors is 2.
Output 29.12.3 shows the initial model specifications of the confirmatory factor model.
Output 29.12.3: Initial Specification of the CFA Model: Scores Data
The first table of Output 29.12.3 shows the pattern of factor loadings of the variables on the two latent factors. As expected, x1
–x3
have nonzero loadings only on the verbal
factor, while y1
–y3
have nonzero loadings on the math
factor. PROC CALIS names these free parameters automatically with the "_Parm" prefix and unique numerical suffixes. There
are six parameters in the factor loading matrix with six different parameter names.
The next table of Output 29.12.3 shows the covariance matrix of the factors. The variances of the factors are fixed at one, as shown on the diagonal of the
covariance matrix. The covariance between the two factors is a free parameter named _Add1
. You did not specify this covariance parameter explicitly in the factor model specification. By default, PROC CALIS assumes
that latent factors are correlated. Default free parameters added by PROC CALIS have the _Add
prefix for their names. If you do not want to assume the covariances among the factors, you must specify zero covariances
in the COV statement. For example, the following statement specifies that the math
and verbal
factors have zero covariance:
COV math verbal = 0.;
The last table of Output 29.12.3 shows the error variance parameters of the observed variables. By default PROC CALIS assumes these error variances are free
parameters in the confirmatory factor model. These added parameters are named with the _Add
prefix. However, as all other default parameters that are assumed by PROC CALIS, you can overwrite the default by using explicit
specifications. You can specify the error variances of a confirmatory factor model explicitly in the PVAR statement. See specifications
in Example 29.13.
Output 29.12.4 shows the fit summary of the confirmatory factor model for the scores
data.
Output 29.12.4: Fit Summary of the CFA Model: Scores Data
The model fit chisquare is 9.805 (df = 8, p = 0.279). This shows that statistically you cannot reject the confirmatory factor model for the test scores. However, the root mean square error of approximation (RMSEA) estimate is 0.0853, which is greater than the conventional 0.05 value for a good model fit. The standardized root mean square residual (SRMR) is 0.0571, which is close to the conventional 0.05 value for a good model fit. Bentler’s comparative fit index is 0.9887, which indicates a very good model fit. Overall, the model seems to be quite reasonable for the data.
Output 29.12.5 shows the loading and factor covariance estimates of the confirmatory factor model for the scores
data. The first table shows the loading estimates, together with the standard error estimates and the t values. In structural equation modeling, the significance of the parameter estimates is usually inferred by comparing the
t values with the critical value of a standardized normal variate (that is, the ztable). Therefore, estimates with associated (absolute) t values greater than 1.96 are significant at =.05. In Output 29.12.5, all the t values for the loading estimates are greater than 2. This indicates that the prescribed relationships between the variables
and the factors are significant.
Output 29.12.5: Loading and Factor Covariance Estimates of the CFA Model: Scores Data
Factor Loading Matrix: Estimate/StdErr/tvalue/pvalue  

verbal  math  
x1 



x2 



x3 



y1 



y2 



y3 


The second table of Output 29.12.5 shows the covariance matrix of the verbal
and the math
factors. Because the factor variances are fixed at one, the covariance estimate is also the correlation between the two factors.
Output 29.12.5 shows that the two factors are moderately correlated with a correlation estimate of 0.5175, which is statistically significant.
Output 29.12.6 shows the estimates of the error variances. All but the error variance of y1
are significant. This suggests that y1
might have an almost perfect relationship with the math
factor.
Output 29.12.6: Error Variance Estimates of the CFA Model: Scores Data
Error Variances  

Variable  Parameter  Estimate  Standard Error 
t Value  Pr > t 
x1  _Add2  11.52376  4.26398  2.7026  0.0069 
x2  _Add3  9.14503  3.83219  2.3864  0.0170 
x3  _Add4  6.68169  2.59770  2.5722  0.0101 
y1  _Add5  0.78580  1.29440  0.6071  0.5438 
y2  _Add6  2.88069  1.09395  2.6333  0.0085 
y3  _Add7  5.15573  1.46854  3.5108  0.0004 
Output 29.12.7 echoes this same fact. The Rsquares in this table shows the percentages of variance of the variables that are overlapped
with the factors. While all these percentages (0.74 – 0.97) are quite high for all variables, the percentage is especially
high for y1
. It shares 97% of the variance with the math
factor. So, it appears that the observed variable y1
is almost a perfect indicator of the math
factor.
Output 29.12.7: Squared Multiple Correlations of the CFA Model: Scores Data
Setting the variances of the latent factors to 1 in the preceding FACTOR model specification makes the model identified. This is necessary because the scales of the latent factors are arbitrary and the constraints imposed on the factor variances fix the scales of the factors.
In practice, there is another way to fix the scales of the factors. For each factor, you can fix the loading of one of its
measured indicators to a constant. This fixed loading value is usually set at 1. For example, you can represent the confirmatory
factor model for the scores
data by the following alternative path diagram:
Output 29.12.8:
This path diagram is essentially the same as the preceding one. However, the fixed constants adjacent to the doubleheaded arrows that attach to the two factors in the preceding path diagram are now moved to two of the singleheaded paths in the current path diagram.
You can specify this path diagram by the following FACTOR model specification of PROC CALIS:
ods graphics on; proc calis data=scores plots=pathdiagram; factor verbal ===> x1x3 = 1. , math ===> y1y3 = 1. ; run; ods graphics off;
The PLOTS=PATHDIAGRAM option requests the path diagram output. In the FACTOR statement, you assign a fixed constant to each
of the path entries. In the first entry, the constant 1 is assigned to the loading of x1
on the verbal
factor, while all other loadings in this entry are (unnamed) free parameters. Similarly, in the second entry, the fixed constant
1 is assigned to the loading of y1
on the math
factor, while all other loadings in this entry are (unnamed) free parameters. This completes the specification of the confirmatory
factor model because all the doubleheaded arrows in the path diagram correspond to default free parameters in the FACTOR
modeling language of PROC CALIS.
Output 29.12.9 shows some fit indices for the current confirmatory factor model for the scores
data.
Output 29.12.9: Fit Summary of the CFA Model with Alternative Identification Constraints: Scores Data
The model fit chisquare is 9.805 (df = 8, p = 0.279). This is the same model fit chisquare as that for the preceding CFA model specification with factor variances constrained to 1. In fact, all fit information in Output 29.12.9 are identical to Output 29.12.4.
Output 29.12.10 shows the path diagram of the confirmatory factor model. The path diagram indicates significant estimates by attaching asterisks to the numerical values. Estimates that are flagged with one asterisk are significant at 0.05 level. Estimates that are flagged with two asterisks are significant at 0.01 level. The path diagram also shows a summary of fit statistics. For more information about specifying path diagram output, see the section Path Diagrams: Layout Algorithms, Default Settings, and Customization.
Output 29.12.10: Path Diagram and Fit Summary: Scores Data
Output 29.12.11 shows the parameter estimates under the current model specification. The loading of x1
on the verbal
factor is a fixed at 1, as required for the identification of the scale of the verbal
factor. Similarly, the loading of y1
on the math
factor is a fixed at 1 for the identification of the scale of the math
factor. All other loading estimates in Output 29.12.11 are not the same as those in the preceding model specification, as shown in Output 29.12.5. The reason is that the scales of the factors (as measured by the estimated standard deviations of the factors) in the two
specifications are not the same. In the current model specification, the verbal
factor has an estimated variance of 34.1123 and the math
factor has an estimated variance of 27.8825, as shown in the second table of Output 29.12.11. Hence, the estimated standard deviations of these two factors are 5.8406 and 5.2804, respectively. But the standard deviations
of the factors in the preceding confirmatory factor model specification are fixed at 1.
Output 29.12.11: Loading and Factor Covariance Estimates of the CFA Model with Alternative Identification Constraints: Scores Data
However, if you multiply the loading estimates in Output 29.12.11 by the corresponding estimated factor standard deviation, you get the same set of loading estimates as in Output 29.12.5. For example, the loading of x1
on the verbal
factor is 1.0 in Output 29.12.11. Multiplying this loading by the estimated standard deviation 5.8406 of the verbal
factor gives you the same corresponding loading as in Output 29.12.5. Another example is the loading of y3
on the math
factor. This loading is 0.7120 in Output 29.12.11. Multiplying this estimate by the estimated standard deviation 5.2804 of the verbal
factor gives an estimate of 3.7596, which matches the corresponding loading estimate in Output 29.12.5. Therefore, the discrepancies in the loading estimates are due to different factor scales in the two specifications. The
loading estimates in Output 29.12.11 are simply rescaled version of the loading estimates in Output 29.12.5.
However, the scales of the factors do not affect the estimates of the error variances, as shown in Output 29.12.12. These estimates are the same as those for the preceding model specification, as shown in the Output 29.12.6.
Output 29.12.12: Error Variance Estimates of the CFA Model with Alternative Identification Constraints: Scores Data
Error Variances  

Variable  Parameter  Estimate  Standard Error 
t Value  Pr > t 
x1  _Add4  11.52376  4.26398  2.7026  0.0069 
x2  _Add5  9.14503  3.83219  2.3864  0.0170 
x3  _Add6  6.68169  2.59770  2.5722  0.0101 
y1  _Add7  0.78580  1.29440  0.6071  0.5438 
y2  _Add8  2.88069  1.09395  2.6333  0.0085 
y3  _Add9  5.15573  1.46854  3.5108  0.0004 
This example shows how you can fit a basic confirmatory factor model by the FACTOR modeling language of PROC CALIS. You can
set the identification constraints and get statistically equivalent estimation results in two different ways. By setting up
additional parameter constraints, you can also fit some variations of the basic confirmatory factor model. See Example 29.13 for illustrations of some restricted confirmatory factor models for the scores
data.
When your data have missing values, with the default ML estimation method PROC CALIS deletes all observations with missing
values for the analysis. This might result in a serious loss of information. Example 29.15 considers a hypothetical situation where some observations in the scores
data have missing values in the observed variables. Only 16 observations have complete data. By using the full information
maximum likelihood (FIML) method for treating the missing data, Example 29.15 shows how you can fully use the information from the scores
data set with missing values.