• Contents
  • About
  • Acknowledgments
    • Credits
      • Documentation
      • Software
      • Support Groups
    • Acknowledgments
  • What’s New in SAS/Genetics 12.1 and 12.3
  • Introduction
    • Overview of SAS/Genetics Software
    • About This Book
      • Chapter Organization
      • Typographical Conventions
      • Options Used in Examples
    • Where to Turn for More Information
      • Online Help System
      • SAS Technical Support Services
    • Related SAS Software
      • Base SAS Software
      • SAS/GRAPH Software
      • SAS/IML Software
      • SAS/INSIGHT Software
      • SAS/STAT Software
  • The ALLELE Procedure
    • Overview: ALLELE Procedure
    • Getting Started: ALLELE Procedure
      • Example
    • Syntax: ALLELE Procedure
      • PROC ALLELE Statement
      • BY Statement
      • POP Statement
      • VAR Statement
      • WITH Statement
    • Details: ALLELE Procedure
      • Statistical Computations
        • Frequency Estimates
        • Measures of Marker Informativeness
        • Testing for Hardy-Weinberg Equilibrium
        • Linkage Disequilibrium (LD)
        • Population Structure
      • Missing Values
      • OUTSTAT= Data Set
      • Displayed Output
      • ODS Table Names
    • Examples: ALLELE Procedure
      • Using the NDATA= Option with Microsatellites
      • Computing Linkage Disequilibrium Measures for SNP Data
    • References
  • The BTL Procedure
    • Overview: BTL Procedure
    • Getting Started: BTL Procedure
      • Example
    • Syntax: BTL Procedure
      • PROC BTL Statement
      • BY Statement
      • CLASS Statement
      • MARKER Statement
      • MODEL Statement
      • PARMEST Statement
      • PARMS Statement
      • RANDOM Statement
      • REPEATED Statement
      • WEIGHT Statement
    • Details: BTL Procedure
      • Statistical Computations
      • Displayed Output
      • ODS Table Names
    • Example: BTL Procedure
      • Performing BTL Model Selection and Estimation
    • References
  • The CASECONTROL Procedure
    • Overview: CASECONTROL Procedure
    • Getting Started: CASECONTROL Procedure
      • Example
    • Syntax: CASECONTROL Procedure
      • PROC CASECONTROL Statement
      • BY Statement
      • STRATA Statement
      • TRAIT Statement
      • VAR Statement
    • Details: CASECONTROL Procedure
      • Statistical Computations
      • Missing Values
      • OUTSTAT= Data Set
      • Displayed Output
      • ODS Table Names
    • Examples: CASECONTROL Procedure
      • Performing Case-Control Tests on Multiallelic Markers
      • Analyzing Data in the Tall-Skinny Format
      • Producing Odds Ratios for Various Disease Models
    • References
  • The FAMILY Procedure
    • Overview: FAMILY Procedure
    • Getting Started: FAMILY Procedure
      • Example
    • Syntax: FAMILY Procedure
      • PROC FAMILY Statement
      • BY Statement
      • ID Statement
      • TRAIT Statement
      • VAR Statement
      • XLVAR Statement
    • Details: FAMILY Procedure
      • Statistical Computations
      • Creating Allelic Transmission Scores
      • Missing Values
      • DATA= Data Set
      • OUTQ= Data Set
      • OUTSTAT= Data Set
      • Displayed Output
      • ODS Table Names
    • Examples: FAMILY Procedure
      • Performing Tests with Missing Parental Data
      • Checking for Genotyping Errors
      • Using Allelic Transmission Scores for Association Tests
    • References
  • The GENESELECT Procedure
    • Overview: GENESELECT Procedure
    • Syntax: GENESELECT Procedure
      • PROC GENESELECT Statement
      • FREQ Statement
      • PERFORMANCE Statement
      • TRAIT Statement
      • VAR Statement
      • IMPORTANCE Statement
      • PARTIALDEP Statement
      • SAVE Statement
      • SCORE Statement
  • The HAPLOTYPE Procedure
    • Overview: HAPLOTYPE Procedure
    • Getting Started: HAPLOTYPE Procedure
      • Example
    • Syntax: HAPLOTYPE Procedure
      • PROC HAPLOTYPE Statement
      • BY Statement
      • ID Statement
      • TRAIT Statement
      • VAR Statement
    • Details: HAPLOTYPE Procedure
      • Statistical Computations
      • Missing Values
      • OUT= Data Set
      • Displayed Output
      • ODS Table Names
    • Examples: HAPLOTYPE Procedure
      • Estimating Three-Locus Haplotype Frequencies
      • Using Multiple Runs of the EM Algorithm
      • Testing for Linkage Disequilibrium
      • Testing for Marker-Trait Associations
      • Creating a Data Set for a Regression Model
      • Using the Tall-Skinny Data Format
    • References
  • The HTSNP Procedure
    • Overview: HTSNP Procedure
    • Getting Started: HTSNP Procedure
      • Example
    • Syntax: HTSNP Procedure
      • PROC HTSNP Statement
      • BY Statement
      • FREQ Statement
      • VAR Statement
    • Details: HTSNP Procedure
      • Statistical Computations
      • Search Algorithms
      • Missing Values
      • Displayed Output
      • ODS Table Names
    • Example: HTSNP Procedure
      • Using the HAPLOTYPE and HTSNP Procedures Together
    • References
  • The INBREED Procedure
    • Overview: INBREED Procedure
    • Getting Started: INBREED Procedure
      • The Format of the Input Data Set
      • Performing the Analysis
    • Syntax: INBREED Procedure
      • PROC INBREED Statement
      • BY Statement
      • CLASS Statement
      • GENDER Statement
      • MATINGS Statement
      • VAR Statement
    • Details: INBREED Procedure
      • Missing Values
      • DATA= Data Set
      • Computational Details
      • OUTCOV= Data Set
      • Displayed Output
      • ODS Table Names
    • Examples: INBREED Procedure
      • Monoecious Population Analysis
      • Pedigree Analysis
      • Pedigree Analysis with BY Groups
    • References
  • The PSMOOTH Procedure
    • Overview: PSMOOTH Procedure
    • Getting Started: PSMOOTH Procedure
      • Example
    • Syntax: PSMOOTH Procedure
      • PROC PSMOOTH Statement
      • BY Statement
      • ID Statement
      • VAR Statement
    • Details: PSMOOTH Procedure
      • Statistical Computations
      • Missing Values
      • OUT= Data Set
    • Example: PSMOOTH Procedure
      • Displaying Plot of PROC PSMOOTH Output Data Set
    • References
  • The TPLOT Macro
    • Overview: TPLOT Macro
    • Syntax: TPLOT Macro
    • Results
      • Plot
      • Menu Bar
      • Toolbar
    • Example: TPLOT Macro


ProductRelease
SAS/Genetics12.3
Type
Usage and Reference
Copyright Date
July 2013
Last Updated
08Jul2013