The ALLELE Procedure

References

  • Botstein, D., White, R.L., Skolnick, M., and Davis, R.W. (1980), Construction of a Genetic Linkage Map in Man Using Restriction Fragment Length Polymorphisms, American Journal of Human Genetics, 32, 314–331.

  • Cockerham, C.C. (1969), Variance of Gene Frequencies, Evolution, 23, 72–84.

  • Cockerham, C.C. (1973), Analyses of Gene Frequencies, Genetics, 74, 679–700.

  • Devlin, B. and Risch, N. (1995), A Comparison of Linkage Disequilibrium Measures for Fine-Scale Mapping, Genomics, 29, 311–322.

  • Guo, S.W. and Thompson, E.A. (1992), Performing the Exact Test of Hardy-Weinberg Proportion for Multiple Alleles, Biometrics, 48, 361–372.

  • Hamilton, D.C. and Cole, D.E. (2004), Standardizing a Composite Measure of Linkage Disequilibrium, Annals of Human Genetics, 68, 234–239.

  • Morton, N.E., Zhang,W., Taillon-Miller, P., Ennis, S., Kwok, P.-Y., and Collins A. (2001), The Optimal Measure of Allelic Association, Proceedings of the National Academy of Sciences of the United States of America, 98, 5217–5221.

  • Schneider, S., Roessli, D., and Excoffier, L. (2000), Arlequin: An Integrated Software Package for Population Genetics Data Analysis, Ver 3.5.1.2, http://cmpg.unibe.ch/software/arlequin35/man/arlequin35.pdf.

  • Weir, B.S. (1979), Inferences about Linkage Disequilibrium, Biometrics, 35, 235–254.

  • Weir, B.S. (1996), Genetic Data Analysis II, Sunderland, MA: Sinauer Associates, Inc.

  • Weir, B.S. and Cockerham, C.C. (1979), Estimation of Linkage Disequilibrium in Randomly Mating Populations, Heredity, 42, 105–111.

  • Wijsman, E.M., Almasy, L., Amos, C.I., Borecki, I., Falk, C.T., King, T.M., Martinez, M.M., Meyers, D., Neuman, R., Olson, J.M., Rich, S., Spence, M.A., Thomas, D.C., Vieland, V.J., Witte, J.S., and MacCluer, J.W. (2001), Analysis of Complex Genetic Traits: Applications to Asthma and Simulated Data, Genetic Epidemiology, 21, S1–S853.

  • Wright, S. (1951), The Genetical Structure of Populations, Annals of Eugenics, 15, 323–354.

  • Zaykin, D. (2004), Bounds and Normalization of the Composite Linkage Disequilibrium Coefficient, Genetic Epidemiology, 27, 252–257.

  • Zaykin, D., Zhivotovsky, L., and Weir, B.S. (1995), Exact Tests for Association between Alleles at Arbitrary Numbers of Loci, Genetica, 96, 169–178.