The HTSNP Procedure (Experimental)

References

  • Clayton, D. (2002), Choosing a Set of Haplotype Tagging SNPs from a Larger Set of Diallelic Loci, http://www-gene.cimr.cam.ac.uk/clayton/software/stata/htSNP/htsnp.pdf

  • Gouesnard, B., Bataillon, T.M., Decoux, G., Rozale, C., Schoen, D.J., and David, J.L. (2001), MSTRAT: An Algorithm for Building Germ Plasm Core Collections by Maximizing Allelic or Phenotypic Richness, The Journal of Heredity 92(1), 93–94.

  • Johnson, G.C.L., Esposito, L., Barratt, B.J., Smith, A.N., Heward, J., Di Genova, G., Ueda, H., Cordell, H.J., Eaves, I.A., Dudbridge, F., Twells, R.C.J., Payne, F., Hughes, W., Nutland, S., Stevens, H., Carr, P., Tuomilehto-Wolf, E., Tuomilehto, J., Gough, S.C.L., Clayton, D.G., and Todd, J.A. (2001), Haplotype Tagging for the Identification of Common Disease Genes, Nature Genetics 29, 233–237.

  • Kirkpatrick, S., Gelatt, C.D., Jr., and Vecchi, M.P. (1983), Optimization by Simulated Annealing, Science 220, 671–680.

  • Metropolis, N., Rosenbluth, A., Rosenbluth, M., Teller, A., and Teller, E. (1953), Equation of State Calculations by Fast Computing Machines, Journal of Chemical Physics 21, 1087–1092.

  • Nijenhuis, A. and Herbert, S.W. (1978), Combinatorial Algorithms for Computers and Calculators, Second Edition, New York: Academic Press.

  • Stram, D.O., Haiman, C.A., Hirschhorn, D.A., Kolonel, L.N., Henderson, B.E., and Pike, M.C. (2003), Choosing Haplotype-Tagging SNPs Based on Unphased Genotype Data Using a Preliminary Sample of Unrelated Subjects with an Example from the Multiethnic Cohort Study, Human Heredity, 55, 27–36.