The output data set specified in the OUTSTAT= option of the PROC CASECONTROL statement contains the following variables for each marker:
the BY variables, if any
Locus
the counts of genotyped individuals for the two values of the TRAIT variable: NumTrait1
and NumTrait2
, where 1 and 2 are replaced by the values of the TRAIT variable
the odds ratio AlleleOddsRatio
and its confidence limits LowerCL
and UpperCL
if the OR option is used
the chi-square statistic for each test performed: ChiSqAllele, ChiSqGenotype,
and ChiSqTrend
the degrees of freedom for each test performed: dfAllele, dfGenotype,
and dfTrend
the -value for each test performed: ProbAllele, ProbGenotype,
and ProbTrend