The HTSNP Procedure (Experimental)

References

  • Clayton, D. (2002), “Choosing a Set of Haplotype Tagging SNPs from a Larger Set of Diallelic Loci,” http://www-gene.cimr.cam.ac.uk/clayton/software/stata/htSNP/htsnp.pdf.

  • Gouesnard, B., Bataillon, T. M., Decoux, G., Rozale, C., Schoen, D. J., and David, J. L. (2001), “MSTRAT: An Algorithm for Building Germ Plasm Core Collections by Maximizing Allelic or Phenotypic Richness,” Journal of Heredity, 92, 93–94.

  • Johnson, G. C. L., Esposito, L., Barratt, B. J., Smith, A. N., Heward, J., Di Genova, G., Ueda, H., Cordell, H. J., Eaves, I. A., Dudbridge, F., Twells, R. C. J., Payne, F., Hughes, W., Nutland, S., Stevens, H., Carr, P., Tuomilehto-Wolf, E., Tuomilehto, J., Gough, S. C. L., Clayton, D. G., and Todd, J. A. (2001), “Haplotype Tagging for the Identification of Common Disease Genes,” Nature Genetics, 29, 233–237.

  • Kirkpatrick, S., Gelatt, C. D., Jr., and Vecchi, M. P. (1983), “Optimization by Simulated Annealing,” Science, 220, 671–680.

  • Metropolis, N., Rosenbluth, A. W., Rosenbluth, M. N., Teller, A. H., and Teller, E. (1953), “Equation of State Calculations by Fast Computing Machines,” Journal of Chemical Physics, 21, 1087–1092.

  • Nijenhuis, A. and Wilf, H. S. (1978), Combinatorial Algorithms, New York: Academic Press.

  • Stram, D. O., Haiman, C. A., Hirschhorn, D. A., Kolonel, L. N., Henderson, B. E., and Pike, M. C. (2003), “Choosing Haplotype-Tagging SNPs Based on Unphased Genotype Data Using a Preliminary Sample of Unrelated Subjects with an Example from the Multiethnic Cohort Study,” Human Heredity, 55, 27–36.