The method of maximum likelihood described in the preceding sections relies on largesample asymptotic normality for the validity of estimates and especially of their standard errors. When you do not have a large sample size compared to the number of parameters, this approach might be inappropriate and might result in biased inferences. This situation typically arises when your data are stratified and you fit intercepts to each stratum so that the number of parameters is of the same order as the sample size. For example, in a matched pairs study with n pairs and p covariates, you would estimate intercept parameters and p slope parameters. Taking the stratification into account by “conditioning out” (and not estimating) the stratumspecific intercepts gives consistent and asymptotically normal MLEs for the slope coefficients. See Breslow and Day (1980) and Stokes, Davis, and Koch (2012) for more information. If your nuisance parameters are not just stratumspecific intercepts, you can perform an exact conditional logistic regression.
For each stratum h, , number the observations as so that hi indexes the ith observation in stratum h. Denote the p covariates for the hith observation as and its binary response as , and let , , and . Let the dummy variables , be indicator functions for the strata ( if the observation is in stratum h), and denote for the hith observation, , and . Denote ) and . Arrange the observations in each stratum h so that for , and for . Suppose all observations have unit frequency.
Consider the binary logistic regression model written as

where the parameter vector consists of , is the intercept for stratum , and is the parameter vector for the p covariates.
From the section Determining Observations for Likelihood Contributions, you can write the likelihood contribution of observation as

where when the response takes Ordered Value 1, and otherwise.
The full likelihood is

Unconditional likelihood inference is based on maximizing this likelihood function.
When your nuisance parameters are the stratumspecific intercepts , and the slopes are your parameters of interest, “conditioning out” the nuisance parameters produces the conditional likelihood (Lachin, 2000)

where the summation is over all subsets of observations chosen from the observations in stratum h. Note that the nuisance parameters have been factored out of this equation.
For conditional asymptotic inference, maximum likelihood estimates of the regression parameters are obtained by maximizing the conditional likelihood, and asymptotic results are applied to the conditional likelihood function and the maximum likelihood estimators. A relatively fast method of computing this conditional likelihood and its derivatives is given by Gail, Lubin, and Rubinstein (1981) and Howard (1972). The optimization techniques can be controlled by specifying the NLOPTIONS statement.
Sometimes the log likelihood converges but the estimates diverge. This condition is flagged by having inordinately large standard errors for some of your parameter estimates, and can be monitored by specifying the ITPRINT option. Unfortunately, broad existence criteria such as those discussed in the section Existence of Maximum Likelihood Estimates do not exist for this model. It might be possible to circumvent such a problem by standardizing your independent variables before fitting the model.
Diagnostics are used to indicate observations that might have undue influence on the model fit or that might be outliers. Further investigation should be performed before removing such an observation from the data set.
The derivations in this section use an augmentation method described by Storer and Crowley (1985), which provides an estimate of the “onestep” DFBETAS estimates advocated by Pregibon (1984). The method also provides estimates of conditional stratumspecific predicted values, residuals, and leverage for each observation. The augmentation method can take a lot of time and memory.
Following Storer and Crowley (1985), the loglikelihood contribution can be written as






and the h subscript on matrices indicates the submatrix for the stratum, , and . Then the gradient and information matrix are






where












and where is the conditional stratumspecific probability that subject i in stratum h is a case, the summation on is over all subsets from of size that contain the index i, and the summation on is over all subsets from of size that contain the indices i and j.
To produce the true onestep estimate , start at the MLE , delete the hith observation, and use this reduced data set to compute the next NewtonRaphson step. Note that if there is only one event or one nonevent in a stratum, deletion of that single observation is equivalent to deletion of the entire stratum. The augmentation method does not take this into account.
The augmented model is

where has a 1 in the hith coordinate, and use as the initial estimate for . The gradient and information matrix before the step are






Inserting the and into the Gail, Lubin, and Rubinstein (1981) algorithm provides the appropriate estimates of and . Indicate these estimates with , , , and .
DFBETA is computed from the information matrix as









where



For each observation in the data set, a DFBETA statistic is computed for each parameter , , and standardized by the standard error of from the full data set to produce the estimate of DFBETAS.
The estimated leverage is defined as

This definition of leverage produces different values from those defined by Pregibon (1984); Moolgavkar, Lustbader, and Venzon (1985); Hosmer and Lemeshow (2000); however, it has the advantage that no extra computations beyond those for the DFBETAS are required.
The estimated residuals are obtained from , and the weights, or predicted probabilities, are then . The residuals are standardized and reported as (estimated) Pearson residuals:

where is the number of events in the observation and is the number of trials.
The STDRES option in the INFLUENCE and PLOTS=INFLUENCE options computes the standardized Pearson residual:

For events/trials MODEL statement syntax, treat each observation as two observations (the first for the nonevents and the second for the events) with frequencies and , and augment the model with a matrix instead of a single vector. Writing in the preceding section results in the following gradient and information matrix:






The predicted probabilities are then , while the leverage and the DFBETAS are produced from in a fashion similar to that for the preceding singletrial equations.