The work of Ratkowsky (1983, 1990) has brought into focus the importance of closetolinear behavior of parameters in nonlinear regression models. The curvature in a nonlinear model consists of two components: the intrinsic curvature and the parametereffects curvature. See the section Relative Curvature Measures of Nonlinearity for details. Intrinsic curvature expresses the degree to which the nonlinear model bends as values of the parameters change. This is not the same as the curviness of the model as a function of the covariates (the x variables). Intrinsic curvature is a function of the type of model you are fitting and the data. This curvature component cannot be affected by reparameterization of the model. According to Ratkowsky (1983), the intrinsic curvature component is typically smaller than the parametereffects curvature, which can be affected by altering the parameterization of the model.
In models with low curvature, the nonlinear least squares parameter estimators behave similarly to least squares estimators in linear regression models, which have a number of desirable properties. If the model is correct, they are best linear unbiased estimators and are normally distributed if the model errors are normal (otherwise they are asymptotically normal). As you lower the curvature of a nonlinear model, you can expect that the parameter estimators approach the behavior of the linear regression model estimators: they behave “close to linear.”
This example uses a simple data set and a commonly applied model for doseresponse relationships to examine how the parametereffects curvature can be reduced. The statistics by which an estimator’s behavior is judged are Box’s bias (Box, 1971) and Hougaard’s measure of skewness (Hougaard, 1982, 1985).
The loglogistic model
is a popular model to express the response Y as a function of dose x. The response is bounded between the asymptotes and . The term in the denominator governs the transition between the asymptotes and depends on two parameters, and . The loglogistic model can be viewed as a member of a broader class of doseresponse functions, those relying on switchon or switchoff mechanisms (see, for example, Schabenberger and Pierce 2002, sec. 5.8.6). A switch function is usually a monotonic function that takes values between 0 and 1. A switchon function increases in x; a switchoff function decreases in x. In the loglogistic case, the function
is a switchoff function for and a switchon function for . You can write general doseresponse functions with asymptotes simply as
The following DATA step creates a small data set from a doseresponse experiment with response y
:
data logistic; input dose y; logdose = log(dose); datalines; 0.009 106.56 0.035 94.12 0.07 89.76 0.15 60.21 0.20 39.95 0.28 21.88 0.50 7.46 ;
A graph of these data is produced with the following statements:
proc sgplot data=logistic; scatter y=y x=dose; xaxis type=log logstyle=linear; run;
When dose is expressed on the log scale, the sigmoidal shape of the doseresponse relationship is clearly visible (Output 63.4.1). The loglogistic switching model in the preceding parameterization is fit with the following statements in the NLIN procedure:
proc nlin data=logistic bias hougaard nlinmeasures; parameters alpha=100 beta=3 gamma=300; delta = 0; Switch = 1/(1+gamma*exp(beta*log(dose))); model y = delta + (alpha  delta)*Switch; run;
The lower asymptote is assumed to be 0 in this case. Since is not listed in the PARAMETERS statement and is assigned a value in the program, it is assumed to be constant. Note that the term Switch
is the switchoff function in the loglogistic model. The BIAS and HOUGAARD options in the PROC NLIN statement request that Box’s bias, percentage bias, and Hougaard’s skewness measure be added to the table of parameter estimates,
and the NLINMEASURES option requests that the global nonlinearity measures be produced.
The NLIN procedure converges after 10 iterations and achieves a residual mean squared error of 15.1869 (Output 63.4.2). This value is not that important by itself, but it is worth noting since this model fit is compared to the fit with other parameterizations later on.
Output 63.4.2: Iteration History and Analysis of Variance
Iterative Phase  

Iter  alpha  beta  gamma  Sum of Squares 
0  100.0  3.0000  300.0  386.4 
1  100.4  2.8011  162.8  129.1 
2  100.8  2.6184  101.4  69.2710 
3  101.3  2.4266  69.7579  68.2167 
4  101.7  2.3790  69.0358  60.8223 
5  101.8  2.3621  67.3709  60.7516 
6  101.8  2.3582  67.0044  60.7477 
7  101.8  2.3573  66.9150  60.7475 
8  101.8  2.3571  66.8948  60.7475 
9  101.8  2.3570  66.8902  60.7475 
10  101.8  2.3570  66.8892  60.7475 
NOTE: Convergence criterion met. 
Note:  An intercept was not specified for this model. 
Source  DF  Sum of Squares  Mean Square  F Value  Approx Pr > F 

Model  3  33965.4  11321.8  745.50  <.0001 
Error  4  60.7475  15.1869  
Uncorrected Total  7  34026.1 
The table of parameter estimates displays the estimates of the three model parameters, their approximate standard errors, 95% confidence limits, Hougaard’s skewness measure, Box’s bias, and percentage bias (Output 63.4.3). Parameters for which the skewness measure is less than 0.1 in absolute value and with percentage bias less than 1% exhibit very closetolinear behavior, and skewness values less than 0.25 in absolute value indicate reasonably closetolinear behavior (Ratkowsky, 1990). According to these rules, the estimators and suffer from substantial curvature. The estimator is especially “farfromlinear.” Inferences that involve and rely on the reported standard errors or confidence limits (or both) for this parameter might be questionable.
Output 63.4.3: Parameter Estimates, Hougaard’s Skewness, and Box’s Bias
Parameter  Estimate  Approx Std Error 
Approximate 95% Confidence Limits 
Skewness  Bias  Percent Bias 


alpha  101.8  3.0034  93.4751  110.2  0.1415  0.1512  0.15 
beta  2.3570  0.2928  1.5440  3.1699  0.4987  0.0303  1.29 
gamma  66.8892  31.6146  20.8870  154.7  1.9200  10.9230  16.3 
The related global nonlinearity measures output table (Output 63.4.4) shows that both the maximum and RMS parametereffects curvature are substantially larger than the critical curvature value recommended by Bates and Watts (1980). In contrast, the intrinsic curvatures of the model are less than the critical value. This implies that most of the nonlinearity can be removed by reparameterization.
Output 63.4.4: Global Nonlinearity Measures
Global Nonlinearity Measures  

Max Intrinsic Curvature  0.2397 
RMS Intrinsic Curvature  0.1154 
Max ParameterEffects Curvature  4.0842 
RMS ParameterEffects Curvature  1.8198 
Curvature Critical Value  0.3895 
Raw Residual Variance  15.187 
Projected Residual Variance  5.922 
One method of reducing the parametereffects curvature, and thereby reduce the bias and skewness of the parameter estimators, is to replace a parameter with its expectedvalue parameterization. Schabenberger et al. (1999) and Schabenberger and Pierce (2002, sec. 5.7.2) refer to this method as reparameterization through defining relationships. A defining relationship is obtained by equating the mean response at a chosen value of x (say, ) to the model:
This equation is then solved for a parameter that is subsequently replaced in the original equation. This method is particularly useful if has an interesting interpretation. For example, let denote the value that reduces the response by %,
Because exhibits large bias and skewness, it is the target in the first round of reparameterization. Setting the expression for the conditional mean at equal to the mean function when yields the following expression:
This expression is solved for , and the result is substituted back into the model equation. This leads to a loglogistic model in which is replaced by the parameter , the dose at which the response was reduced by %. The new model equation is
A particularly interesting choice is K = 50, since is the dose at which the response is halved. In studies of mortality, this concentration is also known as the LD50. For the special case of the model equation becomes
You can fit the model in the LD50 parameterization with the following statements:
proc nlin data=logistic bias hougaard; parameters alpha=100 beta=3 LD50=0.15; delta = 0; Switch = 1/(1+exp(beta*log(dose/LD50))); model y = delta + (alpha  delta)*Switch; output out=nlinout pred=p lcl=lcl ucl=ucl; run;
Partial results from this NLIN run are shown in Output 63.4.5. The analysis of variance tables in Output 63.4.2 and Output 63.4.5 are identical. Changing the parameterization of a model does not affect the model fit. It does, however, affect the interpretation
of the parameters and the statistical properties (closetolinear behavior) of the parameter estimators. The skewness and
bias measures of the parameter LD50
is considerably reduced compared to those values for the parameter in the previous parameterization. Also, has been replaced by a parameter with a useful interpretation, the dose that yields a 50% reduction in mean response. Also
notice that the bias and skewness measures of and are not affected by the LD50
reparameterization.
Output 63.4.5: ANOVA Table and Parameter Estimates in LD50 Parameterization
NOTE: Convergence criterion met. 
Note:  An intercept was not specified for this model. 
Source  DF  Sum of Squares  Mean Square  F Value  Approx Pr > F 

Model  3  33965.4  11321.8  745.50  <.0001 
Error  4  60.7475  15.1869  
Uncorrected Total  7  34026.1 
Parameter  Estimate  Approx Std Error 
Approximate 95% Confidence Limits 
Skewness  Bias  Percent Bias 


alpha  101.8  3.0034  93.4752  110.2  0.1415  0.1512  0.15 
beta  2.3570  0.2928  1.5440  3.1699  0.4987  0.0303  1.29 
LD50  0.1681  0.00915  0.1427  0.1935  0.0605  0.00013  0.08 
To reduce the parametereffects curvature of the parameter, you can use the technique of defining relationships again. This can be done generically, by solving
for , treating as the new parameter (in lieu of ), and choosing a value for that leads to low skewness. This results in the expectedvalue parameterization of . Solving for yields
The interpretation of the parameter that replaces in the model equation is simple: it is the mean dose response when the dose is . Fixing , the following PROC NLIN statements fit this model:
proc nlin data=logistic bias hougaard nlinmeasures; parameters alpha=100 mustar=20 LD50=0.15; delta = 0; xstar = 0.3; beta = log((alpha  mustar)/(mustar  delta)) / log(xstar/LD50); Switch = 1/(1+exp(beta*log(dose/LD50))); model y = delta + (alpha  delta)*Switch; output out=nlinout pred=p lcl=lcl ucl=ucl; run;
Note that the switchoff function continues to be written in terms of and the LD50. The only difference from the previous model is that is now expressed as a function of the parameter . Using expectedvalue parameterizations is a simple mechanism to lower the curvature in a model and to arrive at starting values. The starting value for can be gleaned from Output 63.4.1 at x = 0.3.
Output 63.4.6 shows selected results from this NLIN run. The ANOVA table is again unaffected by the change in parameterization. The skewness for is significantly reduced in comparison to those of the parameter in the previous model (compare Output 63.4.6 and Output 63.4.5), while its bias remains on the same scale from Output 63.4.5 to Output 63.4.6. Also note the substantial reduction in the parametereffects curvature values. As expected, the intrinsic curvature values remain intact.
Output 63.4.6: ANOVA Table and Parameter Estimates in ExpectedValue Parameterization
NOTE: Convergence criterion met. 
Note:  An intercept was not specified for this model. 
Source  DF  Sum of Squares  Mean Square  F Value  Approx Pr > F 

Model  3  33965.4  11321.8  745.50  <.0001 
Error  4  60.7475  15.1869  
Uncorrected Total  7  34026.1 
Parameter  Estimate  Approx Std Error 
Approximate 95% Confidence Limits 
Skewness  Bias  Percent Bias 


alpha  101.8  3.0034  93.4752  110.2  0.1415  0.1512  0.15 
mustar  20.7073  2.6430  13.3693  28.0454  0.0572  0.0983  0.47 
LD50  0.1681  0.00915  0.1427  0.1935  0.0605  0.00013  0.08 
Global Nonlinearity Measures  

Max Intrinsic Curvature  0.2397 
RMS Intrinsic Curvature  0.1154 
Max ParameterEffects Curvature  0.2925 
RMS ParameterEffects Curvature  0.1500 
Curvature Critical Value  0.3895 
Raw Residual Variance  15.187 
Projected Residual Variance  5.9219 