The ALLELE Procedure

References

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  • Cockerham, C. C. (1969), “Variance of Gene Frequencies,” Evolution, 23, 72–84.

  • Cockerham, C. C. (1973), “Analyses of Gene Frequencies,” Genetics, 74, 679–700.

  • Devlin, B. and Risch, N. (1995), “A Comparison of Linkage Disequilibrium Measures for Fine-Scale Mapping,” Genomics, 29, 311–322.

  • Excoffier, L. and Lischer, H. (2011), Arlequin version 3.5: An Integrated Software Package for Population Genetics Data Analysis.
    URL http://cmpg.unibe.ch/software/arlequin35/man/Arlequin35.pdf

  • Guo, S. W. and Thompson, E. A. (1992), “Performing the Exact Test of Hardy-Weinberg Proportion for Multiple Alleles,” Biometrics, 48, 361–372.

  • Hamilton, D. C. and Cole, D. E. (2004), “Standardizing a Composite Measure of Linkage Disequilibrium,” Annals of Human Genetics, 68, 234–239.

  • Morton, N. E., Zhang, W., Taillon-Miller, P., Ennis, S., Kwok, P.-Y., and Collins, A. (2001), “The Optimal Measure of Allelic Association,” in Proceedings of the National Academy of Sciences of the United States of America, volume 98, 5217–5221.

  • Weir, B. S. (1979), “Inferences about Linkage Disequilibrium,” Biometrics, 35, 235–254.

  • Weir, B. S. (1996), Genetic Data Analysis II, Sunderland, MA: Sinauer Associates.

  • Weir, B. S. and Cockerham, C. C. (1979), “Estimation of Linkage Disequilibrium in Randomly Mating Populations,” Heredity, 42, 105–111.

  • Wijsman, E. M., Almasy, L., Amos, C. I., Borecki, I., Falk, C. T., King, T. M., Martinez, M. M., Meyers, D., Neuman, R., Olson, J. M., Rich, S., Spence, M. A., Thomas, D. C., Vieland, V. J., Witte, J. S., and MacCluer, J. W. (2001), “Analysis of Complex Genetic Traits: Applications to Asthma and Simulated Data,” Genetic Epidemiology, 21(Suppl. 1), S1–S853.

  • Wright, S. (1951), “The Genetical Structure of Populations,” Annals of Eugenics, 15, 323–354.

  • Zaykin, D. (2004), “Bounds and Normalization of the Composite Linkage Disequilibrium Coefficient,” Genetic Epidemiology, 27, 252–257.

  • Zaykin, D. V., Zhivotovsky, L. A., and Weir, B. S. (1995), “Exact Tests for Association between Alleles at Arbitrary Numbers of Loci,” Genetica, 96, 169–178.