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The COUNTREG Procedure

Example 10.1 Basic Models

Data Description and Objective

The data set docvisit contains information for approximately 5,000 Australian individuals about the number and possible determinants of doctor visits that were made during a two-week interval. This data set contains a subset of variables taken from the Racd3 data set used by Cameron and Trivedi (1998). The docvisit data set can be found in the SAS/ETS Sample Library.

The variable doctorco represents doctor visits. Additional variables in the data set that you want to evaluate as determinants of doctor visits include sex (coded 0=male, 1=female), age (age in years divided by 100), illness (number of illnesses during the two-week interval, with five or more coded as five), income (annual income in Australian dollars divided by 1,000), and hscore (a general health questionnaire score, where a high score indicates bad health). Summary statistics for these variables are computed in the following statements and presented in Output 10.1.1.

proc means data=docvisit;
   var doctorco sex age illness income hscore;
run;

Output 10.1.1 Summary Statistics
The MEANS Procedure

Variable N Mean Std Dev Minimum Maximum
doctorco
sex
age
illness
income
hscore
5190
5190
5190
5190
5190
5190
0.3017341
0.5206166
0.4063854
1.4319846
0.5831599
1.2175337
0.7981338
0.4996229
0.2047818
1.3841524
0.3689067
2.1242665
0
0
0.1900000
0
0
0
9.0000000
1.0000000
0.7200000
5.0000000
1.5000000
12.0000000

Poisson Model

The following statements fit a Poisson model to the data by using the covariates SEX, ILLNESS, INCOME, and HSCORE:

 proc countreg data=docvisit;
    model doctorco=sex illness income hscore / dist=poisson printall;
 run;

In this example, the DIST= option in the MODEL statement specifies the POISSON distribution. In addition, the PRINTALL option displays the correlation and covariance matrices for the parameters, log-likelihood values, and convergence information in addition to the parameter estimates. The parameter estimates for this model are shown in Output 10.1.2.

Output 10.1.2 Parameter Estimates of Poisson Model
The COUNTREG Procedure

Parameter Estimates
Parameter DF Estimate Standard Error t Value Approx
Pr > |t|
Intercept 1 -1.855552 0.074545 -24.89 <.0001
sex 1 0.235583 0.054362 4.33 <.0001
illness 1 0.270326 0.017080 15.83 <.0001
income 1 -0.242095 0.077829 -3.11 0.0019
hscore 1 0.096313 0.009089 10.60 <.0001

Using the CLASS statement

If some regressors are categorical in nature (meaning that these variables can take only a few discrete qualitative values), specify them in the CLASS statement. In this example, SEX is categorical because it takes only two values. A class variable can be numeric or character.

Consider the following extension:

 proc countreg data=docvisit;
    class sex;
    model doctorco=sex illness income hscore / dist=poisson;
 run;

The partial output is given in Output 10.1.3.

Output 10.1.3 Parameter Estimates of Poisson Model with CLASS statement
The COUNTREG Procedure

Parameter Estimates
Parameter DF Estimate Standard Error t Value Approx
Pr > |t|
Intercept 1 -1.619969 0.063985 -25.32 <.0001
sex 0 1 -0.235583 0.054362 -4.33 <.0001
sex 1 0 0 . . .
illness 1 0.270326 0.017080 15.83 <.0001
income 1 -0.242095 0.077829 -3.11 0.0019
hscore 1 0.096313 0.009089 10.60 <.0001

If the CLASS statement is present, the COUNTREG procedure creates as many indicator or dummy variables as there are categories in a class variable and uses them as independent variables. In order to avoid collinearity with the intercept, the last-created dummy variable is assigned a zero coefficient by default. This means that only the dummy variable associated with the first level of sex (male=0) is used as a regressor. Consequently, the estimated coefficient for this dummy variable is the negative of the one for the original SEX variable in Output 10.1.2 because the reference level has switched from male to female.

Now consider a more practical task. The previous example implicitly assumed that each additional illness during the two-week interval has the same effect. In other words, this variable was thought of as a continuous variable. But this variable has only six values, and it is quite possible that the number of illnesses has a nonlinear effect on doctor visits. In order to check this conjecture, the following statements specify ILLNESS in the CLASS statement so that it is represented in the model by a set of six dummy variables that can account for any type of nonlinearity.

 proc countreg data=docvisit;
    class sex illness;
    model doctorco=sex illness income hscore / dist=poisson;
 run;

The parameter estimates are displayed in Output 10.1.4.

Output 10.1.4 Parameter Estimates of Poisson Model with CLASS statement
The COUNTREG Procedure

Parameter Estimates
Parameter DF Estimate Standard Error t Value Approx
Pr > |t|
Intercept 1 -0.385930 0.088062 -4.38 <.0001
sex 0 1 -0.219118 0.054190 -4.04 <.0001
sex 1 0 0 . . .
illness 0 1 -1.934983 0.121267 -15.96 <.0001
illness 1 1 -0.698307 0.089732 -7.78 <.0001
illness 2 1 -0.471100 0.090742 -5.19 <.0001
illness 3 1 -0.488481 0.099127 -4.93 <.0001
illness 4 1 -0.272372 0.107593 -2.53 0.0114
illness 5 0 0 . . .
income 1 -0.253583 0.077441 -3.27 0.0011
hscore 1 0.094590 0.009025 10.48 <.0001

Each ILLNESS parameter in this model represents the difference between each effect of ILLNESS and ILLNESS=5. Note that these estimates for different ILLNESS categories do not increase linearly, but instead show a relatively large jump from zero illnesses to one followed by relatively smaller increases.

Zero-Inflated Poisson model

Suppose that you suspect that the population of individuals can be viewed as two distinct groups: a low-risk group, consisting of individuals who never go to the doctor, and a high-risk group, consisting of individuals who do go to the doctor. You might suspect that the data have this structure both because the sample variance of DOCTORCO (0.64) exceeds its sample mean (0.30), which suggests overdispersion, and also because a large fraction of the DOCTORCO observations (80%) have the value zero. Estimating a zero-inflated model is one way to deal with overdispersion that results from excess zeros.

Suppose also that you suspect that the covariate AGE has an impact on whether an individual belongs to the low-risk group. For example, younger individuals might have illnesses of much lower severity when they do get sick and be less likely to visit a doctor, all else being equal. The following statements estimate a zero-inflated Poisson regression with AGE as a covariate in the zero-generation process:

 proc countreg data=docvisit;
    model doctorco=sex illness income hscore / dist=zip;
    zeromodel doctorco ~ age;
 run;

In this case, the ZEROMODEL statement that follows the MODEL statement specifies that both an intercept and the variable AGE be used to estimate the likelihood of zero doctor visits. Output 10.1.5 shows the resulting parameter estimates.

Output 10.1.5 Parameter Estimates for ZIP Model
The COUNTREG Procedure

Parameter Estimates
Parameter DF Estimate Standard Error t Value Approx
Pr > |t|
Intercept 1 -1.033387 0.096973 -10.66 <.0001
sex 1 0.122511 0.062566 1.96 0.0502
illness 1 0.237478 0.019997 11.88 <.0001
income 1 -0.143945 0.087810 -1.64 0.1012
hscore 1 0.088386 0.010043 8.80 <.0001
Inf_Intercept 1 0.986557 0.131339 7.51 <.0001
Inf_age 1 -2.090923 0.270580 -7.73 <.0001

The estimates of the zero-inflated intercept (Inf_Intercept) and the zero-inflated regression coefficient for AGE (Inf_age) are approximately 0.99 and –2.09, respectively. Since the zero-inflation model uses a logistic link by default, you can estimate the probabilities for individuals of ages 20, 50, and 70 as follows:

     
     
     

That is, the estimated probability of belonging to the low-risk group is about 0.64 for a 20-year-old individual, 0.49 for a 50-year-old individual, and only 0.38 for a 70-year-old individual. This supports the suspicion that older individuals are more likely to have a positive number of doctor visits.

Alternative models to account for the overdispersion are the negative binomial and the zero-inflated negative binomial models, which can be fit using the DIST=NEGBIN and DIST=ZINB options, respectively.

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