SAS Representation of Standards

Overview

SAS Clinical Standards Toolkit is designed to support various clinical standards. SAS Clinical Standards Toolkit was initially built to support the Clinical Data Interchange Standards Consortium (CDISC) standards. However, the generic framework enables you to define any type of standard, including Health Level 7 (HL7) messages.
Each SAS Clinical Standards Toolkit standard provides a SAS representation of the published source guidelines or source specification. The SAS representation is designed to serve as a model or template of the source specification.
Two key design requirements shaped the implementation of SAS Clinical Standards Toolkit standards.
  • Each supported standard is represented in one or more SAS files. This facilitates the following:
    • It provides SAS users with an implementation of data models and standards that are based on SAS.
    • It enables you to use SAS routines to assess how well any user-defined set of data and metadata conforms to the standard.
    • It enables you to use SAS code to read and derive files in other formats (for example, XML).
      Each SAS Clinical Standards Toolkit standard is an optimized reference standard from a SAS perspective.
  • Users are able to define their own customized standards, or they are able to modify existing SAS standards. For more information about how new standards are registered in SAS Clinical Standards Toolkit, see Registering a New Version of a Standard.
SAS anticipates providing new standards and updates to existing SAS Clinical Standards Toolkit standards periodically. New standards and updates would be based on customer requirements and changes to source guidelines and source specifications.
This document uses the term “reference standard” to refer to the SAS representation of each source specification.
The definition of reference standard depends on several factors, including the complexity of the external source standard, the intended use of the standard, and the user's preferred implementation methodology. Here are three ways to define reference standard:
  • A limited SAS representation of an external standard, defined as one or more SAS files.
    For example, consider two of the CDISC standards supported in SAS Clinical Standards Toolkit. Each CDISC Terminology standard can be represented in its simplest form as either a SAS data set or SAS format catalog of acceptable values. Each CDISC SDTM standard can be represented as a set of domains (SAS data sets), and as an associated set of data sets that describe the data set and column metadata for those domains. For some users, this might be the only information about the standards needed from SAS Clinical Standards Toolkit.
  • A distinct folder hierarchy within the global standards library, comprising the previous definition and any supporting files required by SAS Clinical Standards Toolkit.
    By default, reference standards are specified in the global standards library that is created when SAS Clinical Standards Toolkit is deployed. Each reference standard can be unique in regard to the folder hierarchy and supporting files. Consider the CDISC SDTM standard. The following global standards library folder hierarchy is provided for CDISC SDTM:
    Global Standards Library Folder Hierarchy
    CDISC SDTM folder hierarchy
    The metadata folder contains the data set and column metadata for each supported domain. SAS Clinical Standards Toolkit provides a utility macro (cst_createTablesForDataStandard) that reads this metadata, and builds an empty data set for each supported SDTM domain. All supporting files required by SAS Clinical Standards Toolkit to support the specific CDISC SDTM standard are provided in the remaining folders.
    • The control folder provides these data sets:
      Standards is a single-record file that provides metadata about the standard.
      Standardlookup provides acceptable values for many discrete-value columns for a number of standard metadata files.
      StandardSASReferences is a sample or template specification of records that describes input or output files relevant to using the standard.
    • The macros folder contains any SAS code specific to the CDISC SDTM standard.
    • The messages folder contains messages that are associated with tasks (such as validation) that are supported by SAS Clinical Standards Toolkit.
    • The metadata folder provides these data sets:
      Class_tables identifies a limited set of column collections specific to one or more SDTM domains. This data set is unique to CDISC SDTM.
      Class_columns identifies the full set of unique column definitions used in the SDTM domains. This data set is unique to SDTM.
      Reference_tables provides metadata for the specific data sets (domains) that are supported for CDISC SDTM. This information is different for CDISC SDTM 3.1.1 and CDISC SDTM 3.1.2.
      Reference_columns provides metadata for the specific columns in the domains that are supported for CDISC SDTM. This information is different for CDISC SDTM 3.1.1 and CDISC SDTM 3.1.2.
    • The programs folder contains several properties files that specify generic SAS Clinical Standards Toolkit and specific CDISC SDTM properties translated into SAS global macro variables for a SAS Clinical Standards Toolkit process.
    • The validation/control folder provides check metadata that is associated with the primary CDISC SDTM task supported by SAS Clinical Standards Toolkit.
    Each of these folders is discussed in greater detail in this document.
  • A logical set of files from multiple SAS libraries and multiple standards as defined in the previous two definitions. These are all collated within a single SASReferences data set.
    Each reference standard can be defined by the files itemized in a SASReferences data set and used to perform a standard task. The SASReferences data set documents all of the input and output files that are associated with a SAS Clinical Standards Toolkit process. These files do not need to be limited to a single standard or be resident in a single standard folder hierarchy. Consider a SASReferences data set that supports a process that builds a CDISC CRT-DDS define.xml file. That SASReferences data set might point to CDISC SDTM source data and metadata, a CDISC Terminology SAS format catalog, a set of reference table and column metadata documenting the SAS data sets used to build the define.xml file, and a default style sheet for the generated define.xml file. A broader view of what comprises the CDISC CRT-DDS reference standard must recognize that the standard also references data and metadata from other standards.
Best Practice Recommendation: Instead of changing an existing SAS standard, you should define a new standard. This allows seamless updates to SAS standards, which facilitates operational qualification, demo scripts, and Technical Support debugging a fixed standard. There is a way for you to request a change to an existing standard if there are errors. To define a new standard, which can be just changing an existing standard and saving it as a new standard, see Framework.
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