Problem Note 9096: PROC ALLELE incorrectly computes haplotype frequencies when two loci
have the same exact allele and genotype frequencies
When two loci have the exact same allele and genotype frequencies, PROC
ALLELE will incorrectly report the haplotype frequency in the Linkage
Disequilibrim Table.
There is no circumvention for this problem.
A Technical Support hot fix for Release 8.2 (TS2M0) for this
issue is available at:
http://www.sas.com/techsup/download/hotfix/82_sbcs_prod_list.html#009096
Operating System and Release Information
| SAS System | SAS/Genetics | Microsoft Windows NT Workstation | 8.2 TS2M0 | 9.1 TS1M0 |
| Linux | 8.2 TS2M0 | 9.1 TS1M0 |
| Solaris | 8.2 TS2M0 | |
| 64-bit Enabled Solaris | 8.2 TS2M0 | |
| 64-bit Enabled AIX | 8.2 TS2M0 | 9.1 TS1M0 |
| HP-UX | 8.2 TS2M0 | 9.1 TS1M0 |
| 64-bit Enabled HP-UX | 8.2 TS2M0 | 9.1 TS1M0 |
| AIX | 8.2 TS2M0 | 9.1 TS1M0 |
*
For software releases that are not yet generally available, the Fixed
Release is the software release in which the problem is planned to be
fixed.
| Type: | Problem Note |
| Priority: | alert |
| Topic: | Analytics ==> Genetics
SAS Reference ==> Procedures ==> ALLELE
|
| Date Modified: | 2003-02-06 13:45:32 |
| Date Created: | 2002-12-18 15:11:09 |
