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The HTSNP Procedure


Clayton, D. (2002), "Choosing a Set of Haplotype Tagging SNPs from a Larger Set of Diallelic Loci," [].

Gouesnard, B., Bataillon, T.M., Decoux, G., Rozale, C., Schoen, D.J., and David, J.L. (2001), "MSTRAT: An Algorithm for Building Germ Plasm Core Collections by Maximizing Allelic or Phenotypic Richness," The Journal of Heredity 92(1), 93–94.

Johnson, G.C.L., Esposito, L., Barratt, B.J., Smith, A.N., Heward, J., Di Genova, G., Ueda, H., Cordell, H.J., Eaves, I.A., Dudbridge, F., Twells, R.C.J., Payne, F., Hughes, W., Nutland, S., Stevens, H., Carr, P., Tuomilehto-Wolf, E., Tuomilehto, J., Gough, S.C.L., Clayton, D.G., and Todd, J.A. (2001), "Haplotype Tagging for the Identification of Common Disease Genes," Nature Genetics 29, 233–237.

Kirkpatrick, S., Gelatt, C.D., Jr., and Vecchi, M.P. (1983), "Optimization by Simulated Annealing," Science 220, 671–680.

Metropolis, N., Rosenbluth, A., Rosenbluth, M., Teller, A., and Teller, E. (1953), "Equation of State Calculations by Fast Computing Machines," Journal of Chemical Physics 21, 1087–1092.

Nijenhuis, A. and Herbert, S.W. (1978), Combinatorial Algorithms for Computers and Calculators, Second Edition, New York: Academic Press.

Stram, D.O., Haiman, C.A., Hirschhorn, D.A., Kolonel, L.N., Henderson, B.E., and Pike, M.C. (2003), "Choosing Haplotype-Tagging SNPs Based on Unphased Genotype Data Using a Preliminary Sample of Unrelated Subjects with an Example from the Multiethnic Cohort Study," Human Heredity, 55, 27–36.

Note: This procedure is experimental.

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